Derek Wang, one of our talented BD2K-LINCS DCIC 2022 summer scholars developed #CellShooter cell-shooter.dev.maayanlab.cloud An interactive viewer to discover #targets & #drugs for clusters of patients & single cells with LINCS Program data. Presentation: youtu.be/01chm8-c7-Y Ma'ayan Lab

Learn how Hannah Qu, one of our talented BD2K-LINCS DCIC 2022 summer scholars updated the #ChEA gene set library for #Enrichr maayanlab.cloud/Enrichr/. You can download the updated library from: maayanlab.cloud/Enrichr/geneSe… Presentation: youtube.com/watch?v=BaWMVB… Ma'ayan Lab

This paper nature.com/articles/s4200… led by MEP #LINCS synapse.org/#!Synapse:syn2… is an outcome of a LINCS Program cross-center multi-year collab. Characterizing the response of MCF10A cells to perturbations with EGF, OSM, HGF, INFG, TGFB, and BMP2 profiled with 7 omics technologies.

In this presentation "Benchmarking Methods to Produce #L1000 Consensus Signatures" youtu.be/8u25oN_nNuo Sophia Colmenares, an undergrad Princeton University, describes her summer research project with the Ma'ayan Lab BD2K-LINCS DCIC at Icahn School of Medicine at Mount Sinai. #bioinformatics #STEMeducation

The Common Fund is seeking applications to funding opportunitites regarding #diversity, #FAIRData, #CloudComputing, and #BiomedicalResearch that make use of publicly available data resources. Check out the current opportunities: commonfund.nih.gov/dataecosystem/…

With this feature, that the Ma'ayan Lab just added to #Enrichr maayanlab.cloud/Enrichr/#metad…, you can now search for any term, and then download selected gene sets that contain to the search term in their annotation string. #Bioinformatics #Omics #DataMining #BiomedicalResearch #BigData

Amadori et al. show that plasma from patients with #atherosclerosis triggers unique inflammatory signaling in PBMNCs, which were used for selecting #drugs that may be repurposed for cardiovascular #immunotherapies|Chiara Giannarelli Letizia Amadori NYU CVRC nature.com/articles/s4416…

Last month we welcomed the 2023 cohort of 12 talented undergraduates into our lab for 10-weeks as part of our Summer Research Training Program in Biomedical Big #DataScience labs.icahn.mssm.edu/maayanlab/summ…

Data scientists at Icahn School of Medicine at Mount Sinai and colleagues have created an #ArtificialIntelligence model that may more accurately predict which existing #medicines, not currently classified as harmful, may, in fact, lead to congenital disabilities: mshs.co/3rxxJr0

💡 NEW RESEARCH Communications Medicine - Evangelista et al. construct ReproTox-KG, a #toxicology knowledge graph for exploring the link between drugs, genes & structural birth defects | Ma'ayan Lab AviMaayan Common Fund Data Ecosystem nature.com/articles/s4385…

Join the Ma'ayan Lab Virtual Symposium 8/10 @ 10 AM ET where our trainees in the Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mssm.zoom.us/webinar/regist… #STEM #Bioinformatics #SystemsBiology #DataMining

Summer Research Training Program in Biomedical Big #DataScience in the Ma'ayan Lab Icahn School of Medicine at Mount Sinai ACCEPTING APPLICATIONS FOR SUMMER SESSION 2024 | Application deadline Feb 1 labs.icahn.mssm.edu/maayanlab/summ…

The new #NIH_CFDE Data Resource Center will create a portal to catalyze user-friendly queries of Common Fund data sets and connect users to Common Fund resources to enable new discoveries only possible by searching across Common Fund data. go.nih.gov/GNIq7yC

The Common Fund has rich datasets across many fields of biomedical and behavioral research, and the new #NIH_CFDE Knowledge Center will establish a knowledge network platform to enable scientists to answer questions using Common Fund data. go.nih.gov/GNIq7yC

RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO biorxiv.org/content/10.110…

Rummagene is a search engine for gene sets, created by extracting human and mouse gene sets from supporting materials of >120,000 biomedical research publications: nature.com/articles/s4200… AviMaayan Ma'ayan Lab

Don't forget to tune in on 4/26 at 1PM ET to learn about the #NIH_CFDE program, the #Metabolomics Workbench (Metabolomics Workbench), & get the inside scoop on the Knowledge Center Portal. #DataEcosystem bit.ly/3vX6iJK

On Friday 5/31 @ 1 PM ET, members of the CFDE Workbench will introduce new tools to query the LINCS Program L1000 data and gene expression signatures automatically extracted from NCBI #GEO rummageo.com register: cfde.info

Join us on Tuesday, June 25th at 1:00 PM ET for a virtual workshop introducing the Playbook Workflow Builder: playbook-workflow-builder.cloud, a new #bioinformatics platform to interactively create #workflows with no coding skills. Registration: mssm.zoom.us/webinar/regist… #genomics #omics

Join our Virtual Symposium in Big #DataScience on 8/8 @ 10 AM ET where the @Maayanlab trainees in the 2024 Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mountsinai.zoom.us/webinar/regist…