I invite you all to contribute to a comprehensive tutorial about bottom up proteomics! We will use #manubot (manubot.org) to write collaboratively with github. Please retweet and consider contributing! Link to project: github.com/jessegmeyerlab… #TeamMassSpec

Meet our #FragPipe team at #ASMS2024! We present on DDA+ , DIA, and diaPASEF methods, metaproteomics, benchmarking deep learning prediction tools, DIA glycoproteomics, TPP workflow, Skyline integration with FragPipe, and more! As usual you can probably find me near our posters!

LAX to #ASMS2024. What are the good travel options?

At #ASMS2024 I heard about a package to read bruker data. TIMS Rust. Can someone give me a point to that software?

MetaMorpheus @metamorpheus.bsky.social github.com/MannLabs/timsr…

Proteomics is the key to understanding cellular activity + MetaMorpheus @metamorpheus.bsky.social is unlocking its full potential with innovative software tools for #SingleCell analysis 💻 🧬

Yo. When are those posters and talks gonna be available from #ASMS2024 ?

Proteins within cells are complex, but MetaMorpheus @metamorpheus.bsky.social is developing open source software tools to make #SingleCell proteomic data more sensitive + reliable 🌟

The field benefits when teams work together to make high quality, free search tools available. Team Alexey Nesvizhskii is a fun group to collaborate with. Thanks to Dan Polasky for getting the ball rolling.

After seeing so many people excited about their 1 and 2 percentile scores on R01's posting on X, I feel compelled to share a more common outcome. LOL. Don't worry, it WILL be back. Over and over again until funded. New PI's- this is quite common, don't be discouraged!

Ying Ge UW-Madison Chemistry Journal of Proteome Research Thank the reviewers!

proud of Alyssa's first paper!

Congrats to Isabella Whitworth with side-props to @scienchica, AbenaK-T, et al. for her new study online Journal of Proteome Research IDing host proteins with roles in HBV RNA genome packaging. Another fab viral proteomics collab with MetaMorpheus @metamorpheus.bsky.social. pubs.acs.org/doi/full/10.10…

A fantastic session on women’s initiative and DEI at 2024 Wisconsin Human Proteomics Symposium! Thanks to Lauren and Anna Grace &team for all their hard work! Thanks to all the speakers and panelists! Females in Mass Spectrometry (FeMS) Judith Simcox PhD Amber Mosley Si Wu Michelle Kimple ❤️👍🌸

bioanalysis-zone.com/webinars/the-c… -- What are you doing August 21st? Want to see what my best ever postdoc (also first ever, but he was great!) did this year generating a ground truth mouse model for single cell proteomics?

Also congrats to all the poster awardees: Isabella Whitworth MetaMorpheus @metamorpheus.bsky.social winning the first place 🥇, Matt Fischer Ying Ge Research Lab UW-Madison Chemistry for the 2nd place🥈; Shuangshuang Chen Cy Sweedler lab Chemistry at Illinois and Yutong Bao Andrea Galmozzi lab for 3rd place 🥉🙌🎉👍🎊

I’m excited to see this study in collaboration with NIST published in Analytical Chemistry is out in print! The folks at NIST developed a quantum cascade IR laser for rapid glycan determination. I was happy to contribute some intact mass spec results. Check it out! pubs.acs.org/doi/10.1021/ac…

Benjamin Gyori and I comment on a new frontier of AI-assisted interpretation of proteomic investigations nature.com/articles/s4159…

🔓 #OpenAccess + Most Read in the past 30 days: "Are We There Yet? Assessing the Readiness of Single-Cell Proteomics to Answer Biological Hypotheses" go.acs.org/aHK