Luke Zappia(@_lazappi_) 's Twitter Profileg
Luke Zappia

@_lazappi_

Bioinformatics postdoc
(he/him)

Incase of the Tweet death of the universe find me here @[email protected]

ID:2601010981

linkhttp://lazappi.id.au calendar_today03-07-2014 04:14:26

4,3K Tweets

1,7K Followers

901 Following

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Louis Kuemmerle(@KuemmerleLouis) 's Twitter Profile Photo

We're thrilled to share 'Spapros', our end-to-end probe set selection and design pipeline for designing targeted spatial transcriptomics experiments! biorxiv.org/content/10.110… ,a collab of the labs of Fabian Theis,C. Samakovlis,Ali M. Erturk,Marie Piraud,Peter Horvath, details πŸ§΅πŸ‘‡ 1/N

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Mo Lotfollahi(@Mohlotf) 's Twitter Profile Photo

(1/8) Excited to share our new work, we tackled: 1) how to learn a harmonized cell-type hierarchy/taxonomy across many studies with different annotations, 2) how to automatically identify novel cell states (e.g. disease) when mapping new query data. (doi.org/10.1101/2022.0…)

(1/8) Excited to share our new work, we tackled: 1) how to learn a harmonized cell-type hierarchy/taxonomy across many studies with different annotations, 2) how to automatically identify novel cell states (e.g. disease) when mapping new query data. (doi.org/10.1101/2022.0…)
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Dr Andrew Lonsdale(@LonsBio) 's Twitter Profile Photo

SuperMarioBio is back for ! This is the third year I've done this so it's now officially a tradition. This time I've tried something a bit closer to my day job at Peter Mac Research by looking at the tumour suppressor gene TP53.

Video youtu.be/2D6ByS7wejU or 🧡1/5

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Daniel Burkhardt(@DBBurkhardt) 's Twitter Profile Photo

Ready, set, code! The Open Problems in Single-Cell Analysis competition at is open, featuring $25,000 in prizes & a new multimodal timecourse deeply profiling hematopoiesis πŸ₯³ πŸŽ‰πŸ§ͺ🧫

Join us on Kaggle! kaggle.com/competitions/o…

To learn more, read on πŸ§΅πŸ‘‡

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Miles McBain(@MilesMcBain) 's Twitter Profile Photo

The video of my 'Really Useful Engines' talk to the Statistical Society Of Australia Victorian Branch is now available.

It's about workflows/practices for engineering data science in teams.

Great questions on the night from a lively audience!

github.com/MilesMcBain/re…

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Belinda Phipson(@BelindaPhipson) 's Twitter Profile Photo

Job ads close tomorrow!
1. Single cell/spatial methods dev focused position: wehi.wd3.myworkdayjobs.com/en-US/WEHI/job…
2. Proteomics (statistical methods development): wehi.wd3.myworkdayjobs.com/en-US/WEHI/job…

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Jovana Maksimovic(@JovMaksimovic) 's Twitter Profile Photo

Everything in this article is damning. Declining federal research funding. Lack of job security & flow on effects. Power imbalances. Bullying, sexism, racism, depression & burnout. Inevitable brain drain.
theage.com.au/national/a-hig…

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Giovanni Palla(@g_palla1) 's Twitter Profile Photo

ICML-Compbio-Workshop workshop is in full swing! Checkout our contribution on 'Uncertainty Quantification for Atlas-Level Cell Type Transfer'. icml-compbio.github.io/2022/papers/WC…

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Jennifer Polk, PhD (she, her) β˜€οΈ vacation mode πŸ“–(@FromPhDtoLife) 's Twitter Profile Photo

What parts of a PhD are the 'training' parts? Because teaching classes and all that goes with it isn't training. Writing a dissertation isn't training. Conducting research isn't training. Seems relatively little training is involved and mostly a whole lot of actual work & admin.

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Ramon Massoni Badosa(@rmassonix) 's Twitter Profile Photo

HCATonsilData installs SingleCellExperiment objects from our dataset in a modular fashion. Thanks to the work of Luke Zappia and Aaron Lun, it's very easy to convert it to an AnnData object using zellconverter.

HCATonsilData installs SingleCellExperiment objects from our dataset in a modular fashion. Thanks to the work of @_lazappi_ and Aaron Lun, it's very easy to convert it to an AnnData object using zellconverter.
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Alicia Oshlack(@AliciaOshlack) 's Twitter Profile Photo

Expanded and updated paper from Belinda Phipson

propeller: testing for differences in cell type proportions in single cell data biorxiv.org/content/10.110…

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scRNA-tools.org(@scRNAtools) 's Twitter Profile Photo

We are taking a bit of a break over the European summer so there will be reduced updates for the next few weeks. Apologies for any inconvenience and excited to see what you all do while we are away! πŸ”πŸπŸ•πŸž

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Belinda Phipson(@BelindaPhipson) 's Twitter Profile Photo

I'm looking for a postdoc to join my lab with a focus on developing methods for single cell & spatial data, coupled with exciting collaborative projects in this space. My goal is to foster a supportive & collaborative environment. Apply here -> wehi.wd3.myworkdayjobs.com/en-US/WEHI/job…

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