Can be worse than that?

Happy to announce that our paper : TreeViewer version 2.2.0 is out with Dr. Giorgio Bianchini! Ecology and Evolution Free Software plotting age distributions, spreadsheet editor, publication quality phylogenies, and more. #Phylogenetics Publication: shorturl.at/nwKN6

I am keyed up to present at the CCDM seminar series this week. I will be showing my results on cannabis flavonoids and more..

A classical question in all our #Bioinformatics courses: How do I escape vim? 😅😅

Miniprot v0.13 released with support of non-standard translation tables, minor improvement to junction accuracy and a couple of bug fixes. github.com/lh3/miniprot/r…

Astrobiology!

Well-assembled with common methods and annotations actually

The authors highlight that UMAP/tSNE preserve neighborhoods and conclude: "If used properly, 2D (tSNE/UMAP) embeddings will continue to help charting the world of single-cell biology." Dmitry Kobak Jan Lause 🟦 @janlause.bsky.social🦉 biorxiv.org/content/10.110…

The choice of whether to use Seurat or Scanpy for single-cell RNA-seq analysis typically comes down to a preference of R vs. Python. But do they produce the same results? In biorxiv.org/content/10.110… w/ Joseph Rich et al. we take a close look. The results are 👀 1/🧵

We just published a short paper on iMeta to introduce SeqKit's new functionality, performance optimizations, and improved user-friendliness, since the initial publication 7 years ago. onlinelibrary.wiley.com/doi/10.1002/im…

❤ 6 tools to illustrate your scientific works! (open source web-based tools) #science #opensource #health #phdlife #postdoc #bioinformatics #networkscience #neuroscience #Statistics #Datavisualization #Biology #DataScience #AcademicTwitter #research #Pharmacology #psychology

The PI's contribution to the paper

Exciting! Looking forward to the core release too

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( 1) too slow 2) does NOT integrate well with solar & wind, which already supply 32% of our electricity 3) too expensive (twice the cost of wind/solar 4) solves a problem that we do not have) youtube.com/watch?app=desk…

📢 We're hiring a Post-doctoral Research Fellow to join our Cereal Diseases team! 🌾 If you’re passionate about plant pathology and want to get involved researching genetic resistance for Septoria avenae blotch in oats, apply now 🧬 buff.ly/45UqFVm

Peer review

parallel-fastq-dump by Renan Valieris provides a significant speedup to fastq-dump (~4.5x on 8 threads). h/t Tamara Perteghella github.com/rvalieris/para…

lr-kallisto: Long-read sequencing transcriptome quantification biorxiv.org/content/10.110…

Technical Report of HelixFold3 for Biomolecular Structure Prediction The PaddleHelix research team at Baidu have released their AlphaFold3 replication under an open-source noncommercial license. Performance approaches that of AlphaFold3. abs: arxiv.org/abs/2408.16975 website: