Calum Walsh 🇮🇪🇦🇺 (@calumari_walsh) 's Twitter Profile
Calum Walsh 🇮🇪🇦🇺

@calumari_walsh

Bioinformatician of Microbiomes and General Metagenomics. Based in The Doherty Institute @ University of Melbourne. Psyduck is my spirit animal.

ID: 431233127

calendar_today08-12-2011 02:13:58

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I'm @Ketanjoshi.co on Bluesky (@ketanj0) 's Twitter Profile Photo

Here's the most awkward custom search function I've ever created: everyone you follow, who's also paid Elon $8 for a dodgy tick The Search Of Shame x.com/search?q=filte…

Victoria Pascal (@victoriapascal_) 's Twitter Profile Photo

After a lot of work, it's finally out: rdcu.be/c5xgq 🥳. Profiling the gut microbiome with gutSMASH shows mechanistic differences at the taxa level among other findings. Great team effort: Marnix Medema , Jingyuan Fu, Michael Fischbach , Lianmin Chen, Hannah Augustijn 👏

After a lot of work, it's finally out: rdcu.be/c5xgq 🥳. Profiling the gut microbiome with gutSMASH shows mechanistic  differences at the taxa level among other findings. Great team effort: <a href="/marnixmedema/">Marnix Medema</a> , <a href="/jingyuan_fu/">Jingyuan Fu</a>, <a href="/mfgrp/">Michael Fischbach</a> , <a href="/LianminChen/">Lianmin Chen</a>, <a href="/HannahAugustijn/">Hannah Augustijn</a> 👏
Bioplatforms Australia (@bioplatformsaus) 's Twitter Profile Photo

The Antibiotic Resistant Pathogens Data Initiative multi-omics resource is now published! A wonderful collaboration supporting discovery and translational research to tackle the global challenge in the rise of antimicrobial resistance (1/3) #NCRISimpact nature.com/articles/s4146…

Paul Cotter (@pauldcotter) 's Twitter Profile Photo

Fantastic new publication from the #MicrobeMom team ‘Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach’. Conor Feehily Ian O'Neill Calum Walsh 🇮🇪🇦🇺 Fionnuala McAuliffe NMH & UCD DvS Research Group PrecisionBiotics Group & many more

Fantastic new publication from the #MicrobeMom team ‘Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach’. <a href="/sligomicrobe/">Conor Feehily</a> <a href="/ianjoneill/">Ian O'Neill</a> <a href="/calumari_walsh/">Calum Walsh 🇮🇪🇦🇺</a> <a href="/ProfFMcAuliffe/">Fionnuala McAuliffe NMH & UCD</a> <a href="/VanSinderenLab/">DvS Research Group</a> <a href="/AHealthIrl/">PrecisionBiotics Group</a> &amp; many more
Stefano Giulieri (@stefanoinoz) 's Twitter Profile Photo

Think you know already know everything about beta-lactam resistance in Staphylococcus aureus? Think twice! In my commentary in #AACJournal I describe the hidden side of oxacillin resistance ASM journals.asm.org/doi/10.1128/aa…

Hamish McWilliam (@hmcw_science) 's Twitter Profile Photo

We have an ingenious mechanism to detect living & growing microbes; our MR1 protein binds to microbial metabolites and displays these to T cells to rapidly kick off immunity. Here we share what we have learned about the MR1 microbe monitor rdcu.be/dnl69 Nature Rev Immunol

We have an ingenious mechanism to detect living &amp; growing microbes; our MR1 protein binds to microbial metabolites and displays these to T cells to rapidly kick off immunity. Here we share what we have learned about the MR1 microbe monitor rdcu.be/dnl69 <a href="/NatRevImmunol/">Nature Rev Immunol</a>
Liam Sharkey (@sharkeylkr) 's Twitter Profile Photo

Happy to share our new paper out today on WalKR; the only essential two-component system in S. aureus. We found that WalKR is at the heart of cell growth, linking cell wall turnover to initiation of DNA replication and other essential processes. journals.asm.org/doi/10.1128/mb… (1/5)

APC Microbiome Ireland (@pharmabiotic) 's Twitter Profile Photo

Congratulations to Conor Feehily, Ian O’Neill and Calum Walsh who won the 2023 APC Scientific Excellence Post Doc /Fellow Award Collected on their behalf by PI Prof Paul Cotter

Congratulations to Conor Feehily, Ian O’Neill and Calum Walsh who won the 2023 APC Scientific Excellence Post Doc /Fellow Award 
Collected on their behalf by PI Prof Paul Cotter
Calum Walsh 🇮🇪🇦🇺 (@calumari_walsh) 's Twitter Profile Photo

Great work Sai Ravi Chandra Nori et al. Profiling of vaginal Lactobacillus jensenii isolated from preterm and full-term pregnancies reveals strain-specific factors relating to host interaction - go.shr.lc/3R0AhqE

Guillaume Méric (@phylogeo) 's Twitter Profile Photo

Looking forward to hearing Calum Walsh 🇮🇪🇦🇺 present his work on Bifidobacterium and the infant microbiome at the new Australasian Human Microbiome Research Network Journal Club event 🦠🖥️🧫🍼 Pls join/disseminate if interested!

Mushtaq Bilal, PhD (@mushtaqbilalphd) 's Twitter Profile Photo

Don't use Sci-Hub — it's a "controversial" website with 84M+ research papers freely available. We should try to make billion-dollar academic publishers richer. Here's an updated thread on integrating Sci-Hub with Zotero to get free papers. Please don't do this😉

Calum Walsh 🇮🇪🇦🇺 (@calumari_walsh) 's Twitter Profile Photo

Code and additional details on GitHub (cazzlewazzle89/GROND). Databases on Zenodo (zenodo.org/records/108890…) also contain per-taxon information on intra-genomic RRN sequence diversity, RRN copy number, and source genome size. Useful for normalisation.