Very happy to see this is finally published in Nucleic Acids Res. standR - providing standard and easy workflow to analyse your NanoString GeoMx spatial transcriptomics datasets. academic.oup.com/nar/advance-ar…

Excited to announce the WEHI board has appointed Professor Ken Smith as our next director. 👏👏👏 We look forward to welcoming Ken when he commences in the role in May 2024. Read the story 👇 wehi.edu.au/news/new-direc…

**We are moving platforms** Bioconductor will cease posting on Twitter/X as of December 17, 2023. Instead we will be continuing to post on other social media platforms that better reflect our community’s code of conduct. Read more in our blog post: buff.ly/3RddEAV

**Did you know Bioconductor was leaving Twitter/X!?** Bioconductor will cease posting on Twitter/X as of December 17, 2023. Instead we will be posting on social media platforms that better reflect our community’s code of conduct. Read more here: buff.ly/3RddEAV

Excited to share the first paper from the Tian Lab! With Xiaodong(Ethan) Liu we together established reference and standard to compared multiple sequencing-based spatial transcriptomic (sST) methods. Here is the preprint and some highlights (1/n) biorxiv.org/content/10.110…

Exciting #Postdoc/#RA opportunity to advance #Spatial and #SingleCell Computational #Immunogenomics applied to cancer! South Australian immunoGENomics Cancer Institute Deadline: 14th Jan careers.adelaide.edu.au/cw/en/job/5131… Plz spread the word 🙏 #postdoc #postdocjobs #postdoctoral #postdocposition #researchjobs #sciencejobs

Evaluating spatially variable gene detection methods for spatial transcriptomics data genomebiology.biomedcentral.com/articles/10.11…

The new version of edgeR is coming!

Want an easy to use and fast error/SNP tolerate grep-like tool? Have complex barcodes or indices to demultiplex from raw `omics data? Flexiplex is now published, 🥳academic.oup.com/bioinformatics…, with some great software updates for even more flexibility, github.com/DavidsonGroup/… 1/3

The dawn of spatial omics buff.ly/3SZU5vh

Amazing results from Sergey Koren. Near perfect assembly of human, ont only. "We found the accuracy of Duplex data to be similar to HiFi sequencing, but with read lengths tens of kb longer, .... assemblies have a base accuracy exceeding 99.999% (Q50) and near-perfect continuity"

Interested in 10x Genomics Visium technology and how different tissue handling protocols compare? Check out the SpatialBench project👇 A huge thank you to Mei Du Changqing Charity Law Daniela Zalcenstein Diana Hansen Rory Bowden WEHI (Walter and Eliza Hall Institute) & their teams for data + analysis

Excited to talk about our long-read benchmarking work next week!

Short read sequencing

Just finished teaching another semester of genomic #datavisualization 🥳 Discover the awesome #dataviz made by students in the class for various #singlecell #spatialtranscriptomics data Check out the course notes + #Rstats code to explore for yourself: jef.works/genomic-data-v…

The choice of whether to use Seurat or Scanpy for single-cell RNA-seq analysis typically comes down to a preference of R vs. Python. But do they produce the same results? In biorxiv.org/content/10.110… w/ Joseph Rich et al. we take a close look. The results are 👀 1/🧵

Tumor immunology, simplified😅

🧹🤩 #tidyomics made it to Nature Methods! "The tidyomics ecosystem: Enhancing omic data analyses", 👏🏽, William Hutchison, Timothée Keyes, PhD, and Team! 32 researchers | 26 institutes | 10 countries | 4 continents A #crowd/#community-research success nature.com/articles/s4159… CZI Science

📢🎉 Our lab is recruiting x3! #Postdoc & #PhD Join from🌏 inc AU, EU, US! Great scientific environment and a very attractive salary. 1. #AI for #singlecell biology 2. #Multiomics, immuno diagnosis (sc+spatial+metab.) 3. #tidyomics + #HPC Plz share! 🙏mangiolalaboratory.github.io/Mangiola-Lab-O…

Hello Community! Abstract submission is open for the Bioconductor conference #BiocAsia2024 Sydney 7-8 Nov, happening in synergy with the ABACBS conference. Submit your talk and workshop, join us, and make #BiocAsia2024 wonderful! biocasia2024.bioconductor.org Plz share 🙏