For those who missed it, this lecture is now online! Can Fırtına provides a brief background on sequence analysis & raw nanopore signal analysis before diving into our recent works, RawHash & RawHash2. Recording on YouTube: youtu.be/8dmS37oXb5c. Oznur Tastan Onur Mutlu

We're happy to share our review paper in Nature Protocols on "Packaging and containerization of computational methods", guiding biomedical research to be more accessible, sustainable & robust. w/Mohammed Alser 🇵🇸 Nour Almadhoun Alserr Can Fırtına Serghei Mangul #UkraineWillWin 🇺🇦🇲🇩🇺🇸 Onur Mutlu nature.com/articles/s4159…

Stop by for a chat at Poster Session I RECOMB Conference Series. Can Fırtına & Arvid E. Gollwitzer are there & happy to discuss our work! RawAlign: arxiv.org/abs/2310.05037 MetaFast: arxiv.org/abs/2311.02029 SequenceLab: arxiv.org/abs/2310.16908 Onur Mutlu Joel Lindegger Max Rumpf #RECOMB2024

We're looking forward to Day 3 at #RECOMB2024 and presenting our work at Poster Session 2, 16:30! RawHash2: arxiv.org/pdf/2309.05771 MegIS: arxiv.org/pdf/2311.12527 (MetaStore) Swordfish: arxiv.org/abs/2310.04366 Can Fırtına Nika Mansourighiasi Onur Mutlu BioPIM Project RECOMB Conference Series

For those who missed Poster Session II RECOMB Conference Series, you can find our posters below. Thanks to Can Fırtına & Arvid E. Gollwitzer for presenting our work! RawHash2: arxiv.org/pdf/2309.05771 MegIS: arxiv.org/pdf/2311.12527 Swordfish: arxiv.org/abs/2310.04366 Onur Mutlu BioPIM Project

For those interested in accelerating genome analysis, Can Fırtına will give talks this week in the Boston area! Tomorrow, he'll discuss RawHash & RawHash2 The Jackson Laboratory, May 6 1PM. And Harvard University and Broad Institute May 9 & 10: canfirtina.com/talks/ Onur Mutlu ETH Zurich

Join us tomorrow for the premiere of Can Fırtına's talk at #HiPEAC2024 on "ApHMM: Accelerating Profile Hidden Markov Models for Fast & Energy-Efficient Genome Analysis". Paper: dl.acm.org/doi/10.1145/36… Premiere Wed May 15 11AM CEST: youtube.com/watch?v=a8RFca… HiPEAC Onur Mutlu

We're excited to have Reetu Das with us for the next SAFARI-EFCL seminar on "Landscape of Genomics for Systems Research". Livestream Tue May 21 3PM CEST: youtube.com/watch?v=NxXxes… safari.ethz.ch/safari-efcl-se… Haiyu Mao Can Fırtına Onur Mutlu Electrical & Computer Engineering at Michigan Andrea Cossettini ETH Zurich

We're at the #EFCLSummerSchool this week leading Track 4 on "Computer Architecture & Memory Systems" & mixer groups! For those who can't join in person, follow us online! Livestreams & Playlist: youtube.com/watch?v=qoz12g… Onur Mutlu Geraldo Kanellopoulos Konstantinos Can Fırtına

It is such a nice experience to see people from very diverse backgrounds can create exciting content mainly based on what they have learned over the week in our summer school. Excellent teamwork 💪 PULP Platform SAFARI Research Group #EFCLSummerSchool

We're looking forward to Day 2 ISCA! Nika Mansourighiasi will present our work on MegIS in Session 6A 10:50 AM, don't miss it! arxiv.org/abs/2406.19113 Nika Mansourighiasi w/ Arvid E. Gollwitzer Can Fırtına Haiyu Mao Joel Lindegger Mohammed Alser 🇵🇸 Jisung Park Onur Mutlu BioPIM Project #ISCACONF2024

Join my Rawsamble talk tomorrow (July 14) at 12:00 ET! More information👇

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization academic.oup.com/bioinformatics…

We're glad to share our paper "RawHash2: mapping raw nanopore signals using hash-based seeding and adaptive quantization" is now published in Bioinformatics, August issue. Code: github.com/CMU-SAFARI/Raw… academic.oup.com/bioinformatics… Can Fırtına Joel Lindegger Onur Mutlu BioPIM Project

AirLift algorithm by #JeremieKim, Can Fırtına Meryem Banu Cavlak Damla Şenol Çalı Mohammed Alser 🇵🇸 Nastaran Hajinazar Can Alkan Onur Mutlu / SAFARI Research Group is now published in IEEE Transactions on Computational Biology and Bioinformatics: ieeexplore.ieee.org/document/10638…

We're excited to share our joint work "AirLift" is now published in IEEE TCBB! ieeexplore.ieee.org/document/10638… Paper on arXiv: arxiv.org/abs/1912.08735 Code: github.com/CMU-SAFARI/Air… Can Fırtına Damla Şenol Çalı Mohammed Alser 🇵🇸 Nastaran Hajinazar Can Alkan Onur Mutlu BioPIM Project

Links to the slides for this talk AMD and other talks are at: canfirtina.com/talks/