🧑‍🔬Paper alert: In our latest paper published in Journal of Hepatology, we explored the regulatory network in #hepatocyte ploidy during #ageing . 👇(1/10) journal-of-hepatology.eu/article/S0168-…

Great motivator to head into the weekend: Our donor deconvolution pipeline 'hadge' is out in Genome Biology! genomebiology.biomedcentral.com/articles/10.11…
This Nextflow pipeline combines 12 hashing and genotype based deconvolution methods to also enable a novel joint deconvolution strategy

🔊🔊PODCAST alert🔊🔊 Inspiring deep-dive how #computation #AI will transform disease classification, heterogeneity, genetic cause, new treatments+needed education concepts! Highly recommended (surely biased😅)
🙏🙏🙏Mihaela van der Schaar Fabian Theis Paolo Casale
open.spotify.com/show/5tiWyc9zr…

One framework to rule them all: SpatialData 🔳

Excited to see our efforts in unifying and integrating multimodal spatial omics data highlighted by EMBL. Phenomenal teamwork with Fabian Theis and Josh Moore and more! 💪
Published in Nature Methods: nature.com/articles/s4159……

Helmholtz invests 23 million in research on AI foundation models 
helmholtz.de/en/newsroom/ar… #HFMI Forschungszentrum Jülich | @[email protected] AWI Media KIT Karlsruhe @[email protected] DKFZ DZNE Research Center Max Delbrück Center Helmholtz-Zentrum Berlin GFZ HZDR @[email protected] UFZ DLR - English Helmholtz Munich | @HelmholtzMunich

1/n
Happy to finally share our Nicheformer preprint, this was a huge lab effort - special thanks to Anna Schaar and Fabian Theis for making this possible!

1/n Interested in large-scale foundation models for single-cell and spatial transcriptomics data and curious about using them to enrich your dissociated dataset with spatial context? Happy to share our preprint “Nicheformer: a foundation model for single-cell and spatial omics”.

Guy Wolf MilaQuebec visiting Helmholtz Munich | @HelmholtzMunich as Humboldt-Stiftung fellow to work with us and Bastian Grossenbacher-Rieck lab on manifold learning. Starting with fun talk on geometry and diffusions.

Nicheformer: a foundation model for single-cell and spatial omics biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Exciting news for the Python Single-Cell Community!
Save the date for the first scverse conference in Munich from September 10-12. Inspiring talks, interactive workshops, and networking opportunities. Stay tuned for the registrations, speaker announcements, and more! #scverse2024

Interested in joining the lab? Together with Joachim L. Schultze lab Forschungszentrum DZNE | @[email protected] Bonn we are looking for a postdoc to develop AI-based representations of flow and multi-omics data and apply them in a diagnostic setting across multiple hospitals.
More info & apply: jobs.helmholtz-muenchen.de/jobposting/471…

Final conference program #BioEng24 May 6/7 2024 Helmholtz Munich | @HelmholtzMunich Our program👇includes
✅globally leading scientists #bioengineering #biomedical_AI #biomedicine
✅12 abstract selected short-talks🎇
✅30+ Poster presentations👍
+relevant journal editors
helmholtz-munich.de/en/bioengineer…

Single-cell omics is ever changing. I am using a longitudinal pediatric AML dataset (n = 75) to cover some of these recent updates to the field in a multi-part tutorial series that will cover scRNA and scATAC. Part one covers preprocessing. 🧵 (1/3) youtu.be/cmOlCTGX4Ik?si…

Excited to introduce DinoBloom🦖🌺, an open-source foundation model family (Vit-S to G) for general cell embeddings in #hematology 🩸 Trained w mod. #DINOv2 on 13 datasets w 380,000+ WBC images of blood & bonemarrow. Evaluated on AML subtype & cell classification (knn, lin probe)