Off to Züri by train 🚂 Looking forward to #BioVisionCenter hackathon & symposium! 🤓 Thank you Uppsala universitet BIIF_Sweden for supporting #ecofriendly travel 🌍

Last week, we had an amazing #OME_NGFF_hackathon focused on next generation bioimage analysis workflows. We had 45 community members at the hackathon 🎉 Interested to learn what happened there? We made an overview of the hackathon outcomes here: forum.image.sc/t/outcomes-of-…

Great work by Lasse Meyer now out in BMC Bioinformatics. cytoviewer: an interactive viewer for multiplexed imaging data written in #Rstats. Check out the paper bmcbioinformatics.biomedcentral.com/articles/10.11… and the package bioconductor.org/packages/relea…

The BioVisionCenter is recruiting 🔥🔥🔥 We are hiring a Research Software Engineer, description below. Come work with us in Zurich and contribute to making bioimage analysis at scale accessible to all! If you have any questions reach out to me. jobs.uzh.ch/offene-stellen…

🚨#JobAlert🚨 At the Centre for Cellular Imaging | Uni. of Gothenburg we are #hiring! We are looking for a Research Infrastructure Expert in Smart #Microscopy: #Automation of adaptive end-to-end imaging workflows. Join an interdisciplinary microscopy-loving team! To apply follow the link: web103.reachmee.com/ext/I005/1035/…

📢 Happy to share that our tool DEPICTER (Deep rEPresentatIon CusTERing) has been accepted in Computers in Biology and Medicine! 🙌 Paper: doi.org/10.1016/j.comp… Code: github.com/eduardchelebia… Demo: tissuumaps.scilifelab.se/patient_022_no…

New Spatial Biology specialist position open in our core facility Sydney Cytometry Australia. We have #Xenium #CosMx & #CytAssist (i.e. #Visium) for spatial transcriptomics & #Hyperion platform for multiplex antibody imaging. Check out the job link below usyd.wd3.myworkdayjobs.com/en-US/USYD_EXT…

Join us! Open position as Bioinformatician with us BIIF_Sweden. More information on the image.sc forum under: forum.image.sc/t/bioinformati…

🚨 2 open jobs in the ʝuɢ lab - apply now!🚨 👉 Data Scientist and Research Software Engineer in Computer Vision and AI - careers.humantechnopole.it/o/data-scienti… 👉 Machine Learning Specialist in Computer Vision and Bioimage Analysis - careers.humantechnopole.it/o/bioinformati… What's the difference? A short 🧵

Mark your calendars! 🗓️ 🖊️ I2K (From Images to Knowledge), the conference where bioimage methods research meets research software engineering meets biology, will welcome you at Human Technopole in Milan from Oct. 23rd to 25th! Influence the agenda here: forms.gle/v5brzZ9RnTU4Wv…

1 week to go! Deadline is on February 29.

🧬🤖 Job Opportunity (RT plz)! Omer Ali Bayraktar & I are on the hunt for passionate individuals at the crossroads of Machine Learning & Spatial Biology. Join us for innovative collaborations between labs at Wellcome Sanger Institute. Open to various levels: Postdoc/PhD & Predoc. Questions?

Job alert! I am looking to recruit a bioimage analyst to work with us the Image Analysis Hub core facility of the INSTITUT PASTEUR It is a full time, permanent position as a research engineer, working onsite. Some details and links below ⬇️ Please forward to your networks!

Fantastic to see HIFI coming to light - congratulations to Spencer S Watson et al!

Excited to share Nicheformer! Led by Alejandro Tejada Lapuerta & Anna Schaar, Nicheformer is a foundation model for single-cell & spatial omics. Its innovation is going beyond disassociated analysis to capture & predict local tissue context at single-cell level. biorxiv.org/content/10.110…

Using in situ spatial transcriptomics? Try Proseg, Daniel C. Jones’s new cell segmentation method based on probabilistic and Cellular Potts modeling. Great for Vizgen Merscope, 10x Genomics Xenium, and NanoString CosMx data. Preprint & code: (1/n) doi.org/10.1101/2024.0…

Looking for PhD/PostDoc opportunities in #AI #ML for #spatial #singlecell #cancer #biomedicine? I cannot emphasize enough what an inspiring scientist and supportive mentor Marianna Rapsomaniki is. I take pride just in having done my MSc with her - don't miss this fantastic opportunity!

👀 🤯 👍 Congrats Jan! 🍾 And even more so: congrats SciLifeLab!!! mynewsdesk.com/se/scilifelab/…

And there he is! Jan Ellenberg closing fantastic 2 days of SciLifeLab facility forum as the new director. Looking forward!