Lukas Heumos We have been using pertpy for accessing perturb-seq data a while now. It works great. Looking forward to read this and learn more about the package. Congrats to the whole team!

Adriano Aguzzi Maybe an alternative for some things: bioicons.com

3 days ago I posted a job ad for a PhD position we have available in the lab. I'm always curious to see who applies.

New paper with Melanie Königshoff - led by the awesome Yan Hu, Qianjiang Hu (QJ), and Meshal Ansari we describe specific stem cell states and their regenerative potential in COPD/emphysema. Published in ERJ ERS publications bit.ly/3YTb1s3 Helmholtz Munich | @HelmholtzMunich

Yea, compbio folks beware: Anaconda is now trying to get academic users to pay licensing fees. See this Reddit thread too: reddit.com/r/bioinformati…

Really wish there were a way to delete updates in issues such as "renamed title to XYZ", "issue was transferred from ABC to ZYX", ... GitHub

Great conference and an amazing experience! Thank you for inviting scverse to present a workshop on foundational tools for single-cell RNA-seq data analysis.

📣 The much-revised manuscript of LIANA+, our all-in-one solution to study cell-cell communication from single-cell, spatial, and multi-omics technologies, is now published in Nature Cell Biology nature.com/articles/s4155…

A satisfying ending to my PhD. Again huge thanks to everyone involved and to the community developing the tools and infrastructure.

Awesome week last week representing both napari🔬 and #SpatialData @scverse at @EuroSciPy2024. It was great to meet maintainers and contributors to the libraries we use. Also grateful for the opportunity to have a flashlight talk on #numpydantic and a little bit on #LinkML

If you work with #singlecellRNA/#scRNAseq/#singlecell data, have you ever done an analysis where you started directly from a count matrix you obtained online? Did you know the full provenance of this matrix (upstream processing, versions, options, etc.)?

📣 Thrilled to announce that @TileDB will co-present a workshop with CZI Science at the inaugural scverse conference! Join us at #scverse2024 to explore scaling #singlecell RNA sequencing analysis to datasets with up to 70 million cells. 👉 hubs.la/Q02N-MFC0

I’m thrilled to announce that I will join the Institute of Artificial Intelligence at the Medical University of Vienna (MedUni Wien), led by Christoph Bock Lab @ CeMM & MedUni Vienna, as a tenure-track assistant professor starting December 2024! Check out our website and open positions ai4biomedicine.org

First conference, first selfie with some of the incredible scverse core and volunteers! Feeling so grateful to be part of this amazing community pushing the boundaries of single cell analysis. 🖤🤍 #scverse2024