Cold Springs Harbour is officially renamed to Hot Springs Harbour. #cshlmbiome

Check out our paper about assembling centromeres from long error-prone reads! We present the first automated assembly of human centromere X. biorxiv.org/content/10.110…

Our new bioRxiv is up! "Host, Viral, and Environmental Transcriptome Profiles of SARS-CoV-2." COVID-19 patients (n=338) examined w/ qRT-PCR, RT-LAMP, & total RNA-seq, host responses (e.g. ACE2) & new diagnostic methods. biorxiv.org/content/10.110… Some highlights: /1

Tirlim cookies. Be sad for pleasure. Be sad better and deeper than all.

coronaSPAdes combines ideas from biosyntheticSPAdes, rnaSPAdes, metaSPAdes and metaviralSPAdes to improve the resconsruction of coronavirus genomes. Early access snapshot is available at: cab.spbu.ru/software/coron…. Please contact us for questions, suggestions and other feedback 2/2

We developed a new tool for the coronavirus assembly using HMMs!

Our new method for the recovery of RNA viruses (e.g. Coronaviruses) [led by incomparable Dmitry and Anton Korobeynikov] coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies biorxiv.org/content/10.110…

"Три дня не пить, налево не ходить", - напутствовала меня медсестра в поликлинике после вакцинации. Очень хорошо!

Explore Earth’s Virome with Serratus. We uncover 130,000+ new species of RNA viruses, increasing the total known species by an order of magnitude. (Thread)

Мне нравится как с точки зрения секвенирования Россия похожа на некоторые страны Африки или Антарктиду. И единственное хорошо исследованное место - это Байкал. Требуем гранты на секвенирование всего и вся

Today I launched a bunch of "novel" bioinformatics tools to benchmark, and they all have something in common. They write random numbers into the console without any explanation.

Wow, my first Nature paper is here! And what a paper it is.

The difference between different linked-read platforms is pretty notable. 10X and stLFR have a heavy tail in molecule length distribution. stLFR has mean molecule coverage around 0.4X!

Our latest work is now online ... led by the great Tri-I CBM Dmitry :) Efficient detection and assembly of non-reference DNA sequences with synthetic long reads academic.oup.com/nar/advance-ar…

Our own Tri-I CBM Dmitry presents a new version of his blackbird algorithm for assembly of SVs using hybrid synthetic long reads and low coverage long reads. #GI2022

I have several open positions (at all levels) available in the lab in 2023. Please check the page for details and/or R/T :) physiology.med.cornell.edu/faculty/hajira…

Our recent ccollaborative work with Hagen Tilgner / @[email protected] ... led by the incomparable Dmitry Tri-I CBM Weill Cornell Medicine biorxiv.org/content/10.110…

Our new methods paper, Ariadne, is just out Genome Biology ! Led by my incredible Ph.D. student Tri-I CBM Weill Cornell Medicine Lauren Mak - with contributions from several other current or former students including Dmitry David Danko genomebiology.biomedcentral.com/articles/10.11…

My favourite collaboration with Hagen Tilgner / @[email protected] and Andrey Prjbelski

SPAdes 4.0 is released! github.com/ablab/spades/r… Since 2022 SPAdes is not related to any institution and is maintained by the SPAdes team - an international group of volunteers. Although this might be the last major release, we strongly intend to continue supporting our users!