RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO biorxiv.org/content/10.110…

Mastering R: How to Make Duplicated Rownames Unique youtube.com/watch?v=eV-PCC…

Spatial transcriptomics reveals discrete tumour microenvironments and autocrine loops within ovarian cancer subclones | Nature Communications
nature.com/articles/s4146…

Here's a clip from our latest OMGenomics podcast episode! You can find it on all the podcast platforms -- links here: omgenomics.com/podcast

Non-negative matrix factorization and deconvolution as dual simplex problem | bioRxiv
biorxiv.org/content/10.110…

RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO biorxiv.org/content/10.110…

Mastering R: How to Make Duplicated Rownames Unique youtube.com/watch?v=eV-PCC…

Spatial transcriptomics reveals discrete tumour microenvironments and autocrine loops within ovarian cancer subclones | Nature Communications
nature.com/articles/s4146…

Non-negative matrix factorization and deconvolution as dual simplex problem | bioRxiv
biorxiv.org/content/10.110…

Are you in 2 minds about Academics/Industry in #compbio . We've got your back!
Excited to present a webinar on 'Academia to Industry: Computational biology career advice and tips' by none other than Dr. Ming 'Tommy' Tang (Ming "Tommy" Tang )

27.04.2024 | Virtual | 4:00 PM (IST)

Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model genomebiology.biomedcentral.com/articles/10.11…

I look forward to it!

The AI-first Code Editor cursor.sh looks interesting.

Knowledge Graphs for RAG deeplearning.ai/short-courses/…

Evaluation and optimization of sequence-based gene regulatory deep learning models biorxiv.org/content/10.110…

abhishaike.com/p/the-lore-beh…

twitter likes threads, so I'm going to re-advertise an old post i like

are you in ML? are you curious about how foundation models are advancing our understand of cells? this post may be interesting to you + is layman friendly!

🧵🧵🧵

Enjoy this tweet? follow me Ming "Tommy" Tang and join my newsletter to learn computational biology divingintogeneticsandgenomics.ck.page/newsletter

a single line of unix code to merge RNAseq counts file: awk 'NR == 1 || FNR > 1{print $0'\t'FILENAME}' *tsv | sed '1 s/sample1.tsv/sample/' | sed 's/.tsv//' | csvtk -t spread -k gene -v count #unix youtube.com/watch?v=3SW4zo…

MIT Deep Learning in Life Sciences course youtube.com/playlist?list=…