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Today the UK approved a gene therapy to treat sickle cell disease and thalassemia. It’s the first treatment ever to be licensed using the gene editing tool Crispr and will have huge implications for people living with these conditions. bbc.co.uk/news/health-67…

We have a cool tool for getting whole transcriptomes from spatial-omics datasets, so you can do standard analyses on it! SpatialScope leverages deep generative models on scRNAseq atlases to produce whole tx data from sparse spatial data. rdcu.be/dsknz Ask me Qs here!

Personal transcriptome variation is poorly explained by current genomic deep learning models. #DeepLearning #TranscriptomicVariation #Genomics #Bioinformatics Nature Genetics nature.com/articles/s4158…

An introduction to Applied Bioinformatics github.com/applied-bioinf… Very nice book with python code.

Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis academic.oup.com/gigascience/ar…

I’m very excited to share our work on Gemini today! Gemini is a family of multimodal models that demonstrate really strong capabilities across the image, audio, video, and text domains. Our most-capable model, Gemini Ultra, advances the state of the art in 30 of 32 benchmarks,

I learned how to use ggtreeExtra this week for phylogeny visualization and annotation. ggtree: yulab-smu.top/treedata-book/ ggtreeExtra: bioconductor.org/packages/devel…

CellTICS: an explainable neural network for cell-type identification and interpretation based on single-cell RNA-seq data. #SingleCell #scRNAseq #CellTypeIdentification #NeuralNetworks Briefings in Bioinformatics academic.oup.com/bib/article-ab…

Helpful resources!! In this folder, you'll find SOP, Research Proposals, CV, Reference Letters templates, GRE, TOEFL & IELTS exams prep questions. Link: drive.google.com/drive/mobile/f… Thanks to 🇸🇪NEXTSTEPWITHCHERRY🇵🇹

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Do you need AlphaFold multimer or molecular docking but don't know how to code? Try out Tamarind, a web-based tool for structural biology developed by Deniz Kavi, a previous Stanford undergraduate student in my lab. Currently free for academics :) tamarind.bio

To PhD or not to PhD? Depending on the university and field, a PhD can take anywhere between 3-7 years. While you are in your PhD program, you will make minimum wage. You may also have to delay getting married or starting a family. The most important factor you should keep in

I spent the first 2.5 years of my PhD on the question “What makes individualised treatment effect estimation an interesting Machine Learning problem (and how do we best solve it)?”. Super excited that a review of lots of things we learned along the way was accepted into… 1/8

Bactopia is in pretty good company with nf-core! If Bactopia has been useful for you consider starring it, it's a metric I can use when applying for funding (haha unsuccessfully so far!), but mostly it's very motivating for continued development! github.com/bactopia/bacto…

I have written an 'intermediate programming' course which is aimed at helping improve programming skills of bioinformatics/computational biology graduate students and postdocs. The notes are self-contained and are freely available: iprogramming.bacpop.org

This is what happens when two bubble rings collide

1/ Cloud computing for bioinformatics: Google Cloud buff.ly/3UYJnrz

Since my big autoclave died, I've been using this InstantPot pressure cooker exclusively for all my sterile work. Has not given me contam once and I often run various antibiotic-less media. I set it to max temp n pressure. Set to Pressure Cook mode 30mins. a.co/d/6Brnwgb

Have questions about using #AlphaFold but are afraid to ask? Check out the new practical guide to AlphaFold, co-developed with Google DeepMind. This free, modular course was created with input from the scientific community and is suitable for undergraduates and above.

R Graphics Cookbook: Practical Recipes for Visualizing Data pyoflife.com/r-graphics-coo…