Loving #Visium HD! 32 scheduled runs non-stop till October, plus ongoing #Chromium and #Xenium projects! We need help…tons of it!. Living in Australia and interested in a paid internship? Then email me or my team directly, and we can discuss the details. It can be fun!

Cell Simulation as Cell Segmentation | bioRxiv biorxiv.org/content/10.110…

Our latest paper from ⁦The Dawson Lab⁩ - huge congratulations to ⁦Henrietta Holze⁩ & ⁦Dane Vassiliadis⁩ who led this work - hope the lineage tracing / barcoding community find this helpful cell.com/cell-reports-m…

“Library size confounds biology in spatial transcriptomics data” finally out in Genome biology!

TL;DR
- LS normalisation is bad for domain identification.
- Exercise caution in adapting scRNA-seq methods to ST
- New normalisation methods needed for ST

rdcu.be/dE93v

Super excited to share the first application of #FixNCut ! A fantastic collaboration with Sahar Nissim and his dream team from ⁦Brigham and Women's Hospital⁩ | ⁦Dana-Farber⁩

Adelaide Centre for Epigenetics Uni of Adelaide
South Australian immunoGENomics Cancer Institute

⁦Gastroenterology⁩
gastrojournal.org/article/S0016-…

As my lab develops Seurat, I wanted to share some thoughts on the important Seurat and scanpy package selection preprint from Joseph Rich/Lior Pachter 🧵

Luciano Martelotto 🛠🧬💻🇦🇺 Ioannis Vlachos & yours truly, me, started #GESTALT to build community, transparency & inclusion in the rapidly developing #spatial field. Come #join us & 800+ members as we navigate this new era of #omics . Want to learn more- signup here lnkd.in/gsszw9ch

GESTALT initiative linkedin.com/posts/luciano-…

Seeking experienced senior molecular biologist to lead all single cell/spatial applications running in my lab.

Must be willing to learn new stuff all the time & teach students!

—>Postdoc Level A or B based on experience.

Email CV & Refs to [email protected]

Wanna do standard 3’, 5’ etc ⁦⁦10x Genomics⁩ applications-seq without stress? No worries! FixNCut it baby!

Laura Jiménez Gracia YOU are the best! Holger Heyn Dr. Jasmine Plummer 👩🏻‍🔬🧬🇨🇦🇺🇸 CNAG ⁦Omniscope⁩ genomebiology.biomedcentral.com/articles/10.11…

INCREDIBLE

A must for anyone in #singlecell Rahul Satija

I’m going to leave this here…

HD…😘🫶🫠

🙏 10x Genomics

Mind blowing, batshit crazy stuff coming soon…

SpatialData: an open and universal data framework for spatial omics

nature.com/articles/s4159…

Please don’t forget to complete the updated Membership Form in case you haven’t already done so.

Updated Membership Form: forms.gle/eE9atEAauGBSyB…>

Join the Discussion for real time interaction -  GESTALT WhatsApp Link: chat.whatsapp.com/KuSVjK0E2He8xT…

Global Alliance for Spatial Technologies
GESTALT - March 25, 4pm  (EST)
ALL HANDS MEETING
Dear GESTALT Member,

We would like to invite you to the upcoming GESTALT - All Hands Meeting

REGISTER FOR THE (Zoom) MEETING: broadinstitute.zoom.us/meeting/regist…

Seeking a talent with a robust computational biology background for a Junior Postdoc position. Ideal candidates will have experience in single-cell and spatial transcriptomics OR openness and eagerness to master new skills swiftly are crucial. If you're interested please DM me.

The best course there is…Single Cell (and now also Spatial!) Analysis 2024 | ⁦Cold Spring Harbor Laboratory⁩ ⁦CSHL Courses⁩ ⁦😎

Application Deadline: March 15th, 2024 meetings.cshl.edu/courses.aspx?c…

May 10.,,,stay tuned #GESTALT peeps

🧐Interested in #SpatialOmics ?

‼️‼️Registrations are now open for our 3-day course on Spatial Omics data analysis with R/Bioconductor in May: physalia-courses.org/courses-worksh…

🚀🚀Instructors: Stefano Mangiola & Luciano Martelotto 🛠🧬💻🇦🇺