live #monkeypox case data via collab Global.health Moritz Kraemer open data:
microreact.org/project/monkey…

live linked info from Moritz Kraemer cases+metadata list collaboration within this Microreact to provide live view of the #monkeypox data : microreact.org/project/monkey…

A fantastic achievement by our NIHR GHRU AMR partner AGROSAVIA in becoming the first GFGP certified organisation in the Americas! We are delighted to have supported AGROSAVIA on this journey. Find out more about this achievement👇NIHR Global Health

¡Casi 100k genomas!

Como parte de la vigilancia en tiempo real de #SARSCoV2 , en PathoGenOmicsUV usamos Microreact para visualizar filogenias y seguir cada caso en el tiempo y el espacio.

Lo actualizamos continuamente, ¡echa un vistazo a #MicroreactSpain !👇👀
microreact.org/project/8ipZcB…

Our latest preprint led by Sophia David in collaboration with Frankel Lab, CMBI et al. Widespread emergence of OmpK36 loop 3 insertions among multidrug-resistant clones of Klebsiella pneumoniae

We're hiring: 2 X Digital epidemiologists / data scientists to work with partners at CDC and NIHR GHRU AMR to detail, develop and drive linking genomics to epidemiology with data-flo.io | Microreact| Pathogenwatch Big Data Institute : Details: tinyurl.com/digitalepi

We are very proud of this collaboration led by Sophia David in our team and Frankel Lab, CMBI untangling role of SNPs and mRNA structure in Klebsiella resistance - great cross collaboration and impact of genomics.

World Antimicrobial Awareness Week 21 : #WAAW21 - our NIHR GHRU AMR work on use of genomics for AMR surveillance is featured in New Scientist

👸/🍄Antimicrobial resistance research should have a strategic agenda and the application of cutting-edge technologies for the intelligent understanding. Here, we present the case Colombia #onehealth #WAAW 2021 #WAAW #StopSuperbugs AGROSAVIA NIHR GHRU AMR NIHR Global Health Centre for Genomic Pathogen Surveillance

Pathogen.watch now contains the latest version of Pangolin for SARS-CoV-2 lineage assignment - Rapidly process consensus genome sequences (in seconds) to ID lineage and mutations of concern. Build trees of multiple genomes (in minutes) and link to geospatial epi data.

First sequencing on MinionMk1c. Exicted to visualise the data in real time NIHR GHRU AMR, NIHR Global Health Centre for Genomic Pathogen Surveillance

Here we detail the global landscape of Klebsiella genomics and provide an ongoing resource for surveillance through @pathogenwatch We analyse 1636 genomes sequenced by our consortium together with 16,537 public genomes (all with geospatial data)
biorxiv.org/content/10.110… (10/10)

We are incredibly proud to have been a partner in this initiative focussed on capacity building and ownership of interpretation for genomic surveillance of #AMR : preprints detail technical implementation and examplar insights into Klebsiella pneumoniae

UK scientists designed the world’s most sophisticated #COVID19 genomic sequencing system during the pandemic, processing the data of more than 675,000 coronavirus genomes to date. Here’s how they did it 🧬 > birminghamhealthpartners.co.uk/uk-scientists-… Sam Nicholls Nick Loman Centre for Genomic Pathogen Surveillance #Genomics