Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
doi.org/10.1101/2022.1…

Comparison of read mapping and variant calling tools for the analysis of plant NGS data
doi.org/10.1101/2020.0…

#Genomics #Bioinformatics

High contiguity de novo genome sequence assembly of Trifoliate yam (Dioscorea dumetorum) using long read sequencing
doi.org/10.1101/2020.0…

Chromosome‐level genome assembly of the Asian corn borer, Ostrinia furnacalis
doi.org/10.1101/2022.1…
#Genomics #Bioinformatics #OpenAccess

So excited to have received probably the first P2 solo in the greater China region today. Gonna use it for developing a somatic variant caller and many more exciting projects! Oxford Nanopore #precisionmedicine

DNA satellites are very large repetitive regions of DNA critical to proper cell function. In this webinar, Karen Miga discussed using nanopore tech to resolve these previous challenging regions to identify potential clinically important variants: bit.ly/3RkCATI

Calling all #ASHG22 attendees! Join Danny Miller MD PhD, Fritz Sedlazeck, Carolyn Morrison, and Rosemary Sinclair Dokos on Thursday 27th October to hear unravelling complex human genomes with #nanopore sequencing.

Register here: bit.ly/3e9kN4g

We are pleased to announce a preliminary agenda for NCM 2022! Stay tuned for more announcements as we introduce this year's line up! If you haven't already, follow the link to grab a ticket to be here in #NYC or register to attend online: bit.ly/3saQuO9 #nanoporeconf

High contiguity de novo genome sequence assembly of Trifoliate yam (Dioscorea dumetorum)
doi.org/10.1101/2020.0…

Genome of Lactuca saligna provides insight into non-host resistance to the downy mildew Bremia lactucae
doi.org/10.1101/2022.1…

#Genomics #Bioinformatics

Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
doi.org/10.1101/2022.1…

Comparison of read mapping and variant calling tools for the analysis of plant NGS data
doi.org/10.1101/2020.0…

#Genomics #Bioinformatics #OpenAccess

Untenured PIs saving all their results for one big paper

Comparison of read mapping and variant calling tools for the analysis of plant NGS data
doi.org/10.1101/2020.0…

A Deep-learning based RNA-seq Germline Variant Caller
doi.org/10.1101/2022.1…

#Genomics #Bioinformatics #DataScience #OpenAccess #DataReuse #Python

Automatic identification and annotation of MYB gene family members in plants
doi.org/10.1101/2021.1…

TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors
doi.org/10.1101/2022.1…

#Genomics #Bioinformatics #OpenAccess #DataScience #Python #coding

Discovery of gene-gene co-perturbation through big data
doi.org/10.1101/2022.1…

Evolutionary blocks to anthocyanin accumulation and the loss of an anthocyanin carrier protein in betalain-pigmented Caryophyllales
doi.org/10.1101/2022.1…

#Bioinformatics #OpenAccess #SciComm

Review by Miguel Angel Villalobos-López et al. IJMS MDPI

✔️ #Biotechnological Advances to Improve #Abiotic Stress Tolerance in #Crops

🔓mdpi.com/1422-0067/23/1…

#PlantSci #scicomm Biotechnology Hub for Sustainable Food and Drink CGIAR Excellence in Breeding plant breeder CRISPRpapers CRISPRpapers GenomeResearch #gene

Massive news: eLife to abolish accept/reject decisions: papers will just be “peer reviewed”. Others can argue about this, but lots of interesting consequences. 1/9 elifesciences.org/articles/83889

Are you still using short reads? Our comparison of read mapping and variant calling tools showed that there are many solid strategies. A combination of BWA MEM and GATK worked well across multiple data sets: mdpi.com/2223-7747/9/4/…

My two-cents on today's discourse:

I like Review Commons a lot.
I like bioRxiv a lot.
I like my SciTwitter fam a lot.

This is where my research shall live. Most of my experiments cost less than most journal APCs. Let's me invest in my lab more than pub houses.