🚨 Excited to announce the publication of Sarah Sun's PhD work in Immunity!🚨Key finding: BCG vaccination reprograms the epigenetic landscape of human bone marrow progenitor cells, reshaping innate immune responses. Full study here in open access: authors.elsevier.com/c/1jcFF3qNrUxu…

A benchmark of single-cell ATAC-seq analysis packages. genomebiology.biomedcentral.com/articles/10.11…

Spatial data has its challenges to be visualized specifically together with single cell data, our neighbor labs Omer Ali Bayraktar Muzlifah Haniffa, and the team Tong LI 李彤 Dave Horsfall have cracked it with WebAtlas. nature.com/articles/s4159…

Discovery and generalization of tissue structures from spatial omics data: Cell Reports Methods cell.com/cell-reports-m…

Precise detection of cell-type-specific domains in spatial transcriptomics: Cell Reports Methods cell.com/cell-reports-m…

Honored to co-author this Review Cell "Spatiotemporal omics for biology and medicine" cell.com/cell/fulltext/… Featured at "Cell anniversary focus issue on technology" Big shout out to Xun Xu and Longqi Liu BGI Research BGI Genomics for leading this effort!

Thank you for the shoutout to GESTALT , our community approach to Spatial Omics-the “Scientific Wild West . Come join our effort ! Luciano Martelotto 🛠🧬💻🇦🇺 Ioannis Vlachos

Online now: PD-1 signaling limits expression of phospholipid phosphatase 1 and promotes intratumoral CD8+ T cell ferroptosis dlvr.it/TCTsBb

Check it out: we got the cover of Nature for our latest paper and packages of papers with Chris Mason and many other scientists! nature.com/nature/volumes…

A spatial omics representation method SpaGFT for analyses of complex organs. #SpatialOmics Yuzhou Chang Qin Ma BMBL #BiotechNatureComms nature.com/articles/s4146…

Rare coding variant analysis for human diseases across biobanks and ancestries nature.com/articles/s4158… #journals #feedly

PICASO: Profiling Integrative Communities of Aggregated Single-cell Omics data biorxiv.org/content/10.110…

Online Now: Distinct clinical outcomes and biological features of specific KRAS mutants in human pancreatic cancer dlvr.it/TCXth0

Combination anti-PD-1 and anti-CTLA-4 therapy generates waves of clonal responses that include progenitor-exhausted CD8+ T cells Cancer Cell RaminHerati cell.com/cancer-cell/fu…

FixNCut: A Practical Guide to Sample Preservation by Reversible Fixation for Single Cell Assays: bio-protocol.org/en/bpdetail?id… #Reproducibility #LifeSciences #cellbiology

Excited to see our protocol out Luciano Martelotto 🛠🧬💻🇦🇺 so easy even I can do!!

Scywalker: Scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing academic.oup.com/bioinformatics…

Analyzing submicron spatial transcriptomics data at their original resolution nature.com/articles/s4159… #journals #feedly

Novae: a graph-based foundation model for spatial transcriptomics data biorxiv.org/content/10.110…

Check out the Cell Types Explorer - our multimodal cell census and atlas of mouse primary motor cortex, developed in collaboration with #BICCN. 🔓 Visit: knowledge.brain-map.org/celltypes #studyBRAIN #OpenScienceWeek