Happy to share our preprint: "A billion synthetic 3D-antibody-antigen complexes enable unconstrained machine-learning formalized investigation of antibody specificity prediction" biorxiv.org/content/10.110… Check out Absolut! database+software to simulate more github.com/csi-greifflab/…

Thank you FlandersVaccine for giving our CEO Sander Wuyts the opportunity to present ourselves at Immunity For Health 2021! #2021IfH

If you're interested in the analysis of immune repertoires, come and check out the iReceptor Plus seminar series, featuring talks from Sai Reddy and myself. Register for free at: ireceptor-plus.com/news-and-event…

Tune in to my presentation on Immunological Determinants of Chronic Visceral Leishmaniasis in HIV-coinfected Patients the 4th of November at the LEAP conference hosted by Drugs for Neglected Diseases initiative! afrikadia.org/leap-scientifi…

We are happy to report a dramatic speedup for one of the core computations for adaptive immune receptor repertoire (AIRR) analysis - the discovery and counting of receptors that overlap between repertoires! Check out our CompAIRR method: biorxiv.org/content/10.110… 1/7

Very happy that immuneML is now in and on the cover of Nature Machine Intelligence. Fantastic collaboration with the Geir Kjetil Sandve lab. Amazing work by the lead authors Milena Pavlović and Lonneke Scheffer, PhD🧬💻. (Cover art by ayam and Lonneke Scheffer, PhD🧬💻).

#Omicron, the latest SARS-CoV-2 variant of concern is characterized by a large number of mutations. Predicting and evaluating the effect of the mutations accumulated in this variants is important, as this can help in defining strategic decisions for controlling the pandemic. 1/6

A new Science analysis of data from U.S. military recruits suggests multiple sclerosis—a disease considered of unknown etiology—is a complication of infection with Epstein-Barr virus. Learn more ⬇ fcld.ly/sicotxm #SciencePerspective: fcld.ly/ehqno7q

Single-cell sequencing technologies enable a systems-level understanding of T cell biology. Here, we provide an overview of the current state of the field, regarding the integration of TCR and gene expression profiles. Out now in ImmunoInformatics. sciencedirect.com/science/articl…

Kicking off today's session of the biomina Lunch Talks with Antonio Mauro Rezende from Institute of Tropical Medicine Antwerp, presenting his work on Oxford Nanopore-based metagenomics as a diagnostic tool for infectious diseases.

Next up: Wouter De Coster from VIB Center for Molecular Neurology discussing the use of long-read sequencing for tandem repeat variability identification in frontotemporal dementia at the biomina Lunch Talks.

Our new paper on deciphering how complex #DeepLearning models make #TCR - #epitope predictions is out on biorxiv! Great job by Ceder Dens! #AIRR biorxiv.org/content/10.110…

Very excited to be among @CZIScience data insights grantees to support #singlecell #dataanalysis methods! Predictably for us, it involves #AIRR #TCR data and a new dinosaur reference, #Stego ! biomina TCRex tool Chan Zuckerberg Initiative chanzuckerberg.com/science/progra…

Happy to announce the Third Antwerp #TCR meeting on May 3-4, 2023! We have an amazing line-up of keynotes to make up for the hiatus. Spaces limited! Registration/submissions soon! uantwerpen.be/atcr23 #atcr23 airr_community #Immunology

Ahead of this year's #ATCR23 meeting in Antwerp, we will be organizing a short workshop on #TCR data analysis and interpretation, using tools such as TCRex tool and ClusTCR. Free registration, but only 30 spots! uantwerpen.be/en/conferences…

Very excited to see our #AIRR based #COVID #diagnostics paper by Alexandra Vujkovic published in Journal of Infectious Diseases ! This might be the first paper to show that #TCR-#epitope #prediction models can be used for powerful diagnostic solutions! doi.org/10.1093/infdis…

A Matters Arising on #ShortcutLearning and #Data #Bias in the #TCR - #Epitope #MachineLearning challenge by Ceder Dens is now out in Nature Machine Intelligence ! nature.com/articles/s4225…

What #Tcells are hiding in your #SingleCell data? Plenty of existing tools that claim to address this challenge, but are they consistent? Our review is now out in Frontiers - Immunology , with thanks to Chan Zuckerberg Initiative for funding! doi.org/10.3389/fimmu.…