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Ruibang Laurent Luo
@aquaskyline
Associate Professor of Computer Science at HKU. Private Pilot. #bioinformatics/#engineering. Learning 🏌️ recently.
ID:109840044
http://luo-lab.hk 30-01-2010 13:10:52
788 Tweet
804 Takipçi
347 Takip Edilen
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So excited to have received probably the first P2 solo in the greater China region today. Gonna use it for developing a somatic variant caller and many more exciting projects! Oxford Nanopore #precisionmedicine
![Ruibang Laurent Luo (@aquaskyline) on Twitter photo 2022-10-20 10:45:12 So excited to have received probably the first P2 solo in the greater China region today. Gonna use it for developing a somatic variant caller and many more exciting projects! @nanopore #precisionmedicine So excited to have received probably the first P2 solo in the greater China region today. Gonna use it for developing a somatic variant caller and many more exciting projects! @nanopore #precisionmedicine](https://pbs.twimg.com/media/FfgbYWvacAMzyTf.jpg)
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Excited to share our findings training GPN, a DNA language model for Arabidopsis thaliana, with @sanjitsbatra and Yun S. Song:
DNA language models are powerful predictors of non-coding variant effects, without the need for any labeled data.
doi.org/10.1101/2022.0…
1/n
![Gonzalo Benegas (@gsbenegas) on Twitter photo 2022-08-23 18:29:56 Excited to share our findings training GPN, a DNA language model for Arabidopsis thaliana, with @sanjitsbatra and @yun_s_song: DNA language models are powerful predictors of non-coding variant effects, without the need for any labeled data. doi.org/10.1101/2022.0… 1/n Excited to share our findings training GPN, a DNA language model for Arabidopsis thaliana, with @sanjitsbatra and @yun_s_song: DNA language models are powerful predictors of non-coding variant effects, without the need for any labeled data. doi.org/10.1101/2022.0… 1/n](https://pbs.twimg.com/media/Fa3XD3yUIAAo8-X.jpg)
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A retrospective of our experience at #epi2melabs of using Nextflow to deliver bioinformatic workflows for Oxford Nanopore data analysis
labs.epi2me.io/two-years-of-n…
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Please RT: We are looking for talented #Bioinformatics #postdocjobs who want to work on Oxford Nanopore & PacBio data from human population to diseases ( #Cancer , #Parkinsons , ..). Develop your own research and methods at scale. Apply: jobs.bcm.edu/job/Houston-Po… BCM HGSC From the Labs at Baylor College of Medicine
![Fritz Sedlazeck (@sedlazeck) on Twitter photo 2022-06-28 12:27:43 Please RT: We are looking for talented #Bioinformatics #postdocjobs who want to work on @nanopore & @PacBio data from human population to diseases (#Cancer, #Parkinsons, ..). Develop your own research and methods at scale. Apply: jobs.bcm.edu/job/Houston-Po… @BCM_HGSC @BCMFromtheLabs Please RT: We are looking for talented #Bioinformatics #postdocjobs who want to work on @nanopore & @PacBio data from human population to diseases (#Cancer, #Parkinsons, ..). Develop your own research and methods at scale. Apply: jobs.bcm.edu/job/Houston-Po… @BCM_HGSC @BCMFromtheLabs](https://pbs.twimg.com/media/FWVs7BiXgAUFoQS.png)
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We have started collecting and uploading #RECOMBSeq2022 presentation videos to our official YouTube channel. More will be added as we receive them. The playlist is here: youtube.com/playlist?list=…
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Kit14 on the Oxford Nanopore #PromethION bringing back kit10 like yields with kit12 like accuracy and sensitivity. Need a bigger GPU 🤣 60 ng of DNA loaded onto the flowcell.
![Rasmus Kirkegaard (@kirk3gaard) on Twitter photo 2022-06-27 08:28:40 Kit14 on the @nanopore #PromethION bringing back kit10 like yields with kit12 like accuracy and sensitivity. Need a bigger GPU 🤣 60 ng of DNA loaded onto the flowcell. Kit14 on the @nanopore #PromethION bringing back kit10 like yields with kit12 like accuracy and sensitivity. Need a bigger GPU 🤣 60 ng of DNA loaded onto the flowcell.](https://pbs.twimg.com/media/FWPtia-WIAADVck.jpg)
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The exciting reveal of Ultima Genomics last week was accompanied by the publication of four preprints. Intrigued by the potential of the technology, Sina Booeshaghi & I decided to take a look at the data. A 🧵 about our findings & a preprint we posted: biorxiv.org/content/10.110… 1/
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After many months, I'm proud to share our work on untangling genome assembly graphs with GNNs. Or, GNNome Assembly (sorry not sorry)🧬
Paper: arxiv.org/abs/2206.00668
Code/Data: github.com/lvrcek/GNNome-…
with Xavier Bresson, T. Laurent, Martin Schmitz, and Mile Sikic.
Read more in 🧵
![Lovro Vrček (@lovrovrcek) on Twitter photo 2022-06-03 05:34:10 After many months, I'm proud to share our work on untangling genome assembly graphs with GNNs. Or, GNNome Assembly (sorry not sorry)🧬 Paper: arxiv.org/abs/2206.00668 Code/Data: github.com/lvrcek/GNNome-… with @xbresson, T. Laurent, @Martin_fschmitz, and @msikic. Read more in 🧵 After many months, I'm proud to share our work on untangling genome assembly graphs with GNNs. Or, GNNome Assembly (sorry not sorry)🧬 Paper: arxiv.org/abs/2206.00668 Code/Data: github.com/lvrcek/GNNome-… with @xbresson, T. Laurent, @Martin_fschmitz, and @msikic. Read more in 🧵](https://pbs.twimg.com/media/FUTbJnCVUAIYTzO.jpg)
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Image fraud gets a boost from AI
* Deepfakes in the biomedical literature are coming, if they aren't here already.
* GAN technology can easily create fake photos of Western blots or cancer cells.
Bradley van Paridon reports for Advanced Sci News
advancedsciencenews.com/image-fraud-ge…
hello #BoG22 attendees, I'm recruiting postdocs. See a list of former lab members at salzberg-lab.org/lab-members/ incl @carlk Martin Steinegger 🇺🇦 Cole Trapnell Michael Schatz Ben Langmead Daehwan Kim Ruibang Luo and others. If you want to join this group someday, email me!